C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family A (ABC1), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371605 ABCA2-202 ENSG00000107331 9606 - 9:137007234-137028288 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000371605
Transcript ID Adrenal Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000371605 1.942±0.00 1.955±0.00 5.589±0.00 2.575±1.34 3.187±2.98 0.620±0.52 4.291±0.00 1.162±0.00 0.786±0.38 2.595±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 NAS nucleotide binding
GO:0005524 ISS:IEA ATP binding
GO:0005764 IDA lysosome
GO:0005765 NAS lysosomal membrane
GO:0005768 IDA endosome
GO:0005815 ISS microtubule organizing center
GO:0006200 IEA ATP catabolic process
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006629 NAS lipid metabolic process
GO:0006810 NAS transport
GO:0016020 IDA membrane
GO:0016021 NAS integral component of membrane
GO:0016023 ISS cytoplasmic membrane-bounded vesicle
GO:0016887 IDA:IEA ATPase activity
GO:0032383 IMP regulation of intracellular cholesterol transport
GO:0042493 TAS response to drug
GO:0042626 NAS ATPase activity, coupled to transmembrane movement of substances
GO:0042632 IEP cholesterol homeostasis
GO:0043190 NAS ATP-binding cassette (ABC) transporter complex
GO:0048545 IEP response to steroid hormone
GO:0055085 NAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102919 Abca2-001 protein_coding Mus_musculus 0 8176
ENSMUST00000125520 Abca2-007 processed_transcript Mus_musculus 0 680
ENSMUST00000149385 Abca2-004 processed_transcript Mus_musculus 0 545
ENSMUST00000143075 Abca2-003 processed_transcript Mus_musculus 0 481
ENSMUST00000144560 Abca2-005 processed_transcript Mus_musculus 0 472
ENSMUST00000150550 Abca2-002 processed_transcript Mus_musculus 0 399
ENSMUST00000141065 Abca2-006 processed_transcript Mus_musculus 0 339
ENSMUST00000171637 Abca7-202 protein_coding Mus_musculus 7e-38 165
ENSMUST00000043866 Abca7-201 protein_coding Mus_musculus 7e-38 165
ENSMUST00000132517 Abca7-001 protein_coding Mus_musculus 7e-38 165

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