C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphodiesterase 6C, cGMP-specific, cone, alpha prime
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371447 PDE6C-001 ENSG00000095464 9606 + 10:93612588-93666010 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLungOvaryPlacentaTestisENST00000371447
Transcript ID Adipose Brain Breast Colon Heart Lung Ovary Placenta Testis
ENST00000371447 0.020±0.00 0.076±0.00 0.035±0.01 0.060±0.00 0.033±0.01 0.040±0.00 0.052±0.02 0.017±0.00 0.041±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000102 CIL_000102_0001 CGP 10:93591687-93666010
CIL_000103 CIL_000103_0001 CGP 10:93612588-93702572

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004114 IEA 3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007165 IEA signal transduction
GO:0007601 IEA visual perception
GO:0007603 IEA phototransduction, visible light
GO:0008152 IEA metabolic process
GO:0030553 IEA cGMP binding
GO:0046549 IEA retinal cone cell development
GO:0046872 IEA metal ion binding
GO:0047555 IEA 3',5'-cyclic-GMP phosphodiesterase activity
GO:0050953 IEA sensory perception of light stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025956 Pde6c-201 protein_coding Mus_musculus 0 2575
ENSMUST00000112329 Pde6c-202 protein_coding Mus_musculus 0 2193

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