C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type IV, alpha 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361603 COL4A5-001 ENSG00000188153 9606 + X:108439882-108697545 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverMuscleOvaryPlacentaENST00000361603
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Muscle Ovary Placenta
ENST00000361603 0.371±0.00 0.231±0.00 1.603±1.23 0.367±0.00 0.549±0.00 0.040±0.00 0.034±0.00 0.257±0.00 0.731±0.41 3.026±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000172 CIL_000172_0002 CGP X:108155607-108697545

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007411 TAS axon guidance
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112931 Col4a5-001 protein_coding Mus_musculus 0 6759
ENSMUST00000112930 Col4a5-002 protein_coding Mus_musculus 0 6754
ENSMUST00000130732 Col4a5-003 protein_coding Mus_musculus 0 3302
ENSMUST00000128669 Col4a5-004 processed_transcript Mus_musculus 0 680

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