C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CTR9, Paf1/RNA polymerase II complex component
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361367 CTR9-001 ENSG00000198730 9606 + 11:10750987-10779743 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361367
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361367 6.702±0.00 8.680±0.00 0.886±0.00 3.385±2.09 7.520±0.00 3.518±3.16 3.130±2.51 8.392±5.55 1.952±1.00 2.606±0.87 2.338±1.71 5.315±2.58 7.158±2.22 19.155±4.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JB CIL_0004JB_0001 CGP 11:10573091-10779743
CIL_000417 CIL_000417_0002 CGP 11:10750987-10809110

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0001711 ISS endodermal cell fate commitment
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007259 ISS JAK-STAT cascade
GO:0010390 IDA histone monoubiquitination
GO:0016055 IEA Wnt signaling pathway
GO:0016593 IDA Cdc73/Paf1 complex
GO:0019827 IDA stem cell maintenance
GO:0032968 IDA positive regulation of transcription elongation from RNA polymerase II promoter
GO:0033523 IDA histone H2B ubiquitination
GO:0035327 ISS transcriptionally active chromatin
GO:0042169 IEA SH2 domain binding
GO:0045638 IDA negative regulation of myeloid cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051571 IMP positive regulation of histone H3-K4 methylation
GO:0070102 ISS interleukin-6-mediated signaling pathway
GO:0071222 ISS cellular response to lipopolysaccharide
GO:0080182 IMP histone H3-K4 trimethylation
GO:2001162 IMP positive regulation of histone H3-K79 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005749 Ctr9-001 protein_coding Mus_musculus 0 4702
ENSMUST00000152019 Ctr9-002 retained_intron Mus_musculus 0 2815
ENSMUST00000143818 Ctr9-005 processed_transcript Mus_musculus 0 475
ENSMUST00000123681 Ctr9-008 processed_transcript Mus_musculus 0 324
ENSMUST00000146558 Ctr9-007 retained_intron Mus_musculus 0 305
ENSMUST00000157025 Ctr9-003 retained_intron Mus_musculus 0 305
ENSMUST00000140220 Ctr9-006 retained_intron Mus_musculus 0 296
ENSMUST00000146709 Ctr9-004 retained_intron Mus_musculus 0 233

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