C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger and SCAN domain containing 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361328 ZSCAN20-004 ENSG00000121903 9606 + 1:33472645-33496507 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361328
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361328 0.166±0.00 0.412±0.00 0.345±0.20 0.408±0.06 0.127±0.05 0.117±0.06 0.100±0.00 0.156±0.05 0.059±0.00 0.295±0.14 0.357±0.04 0.465±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097K CIL_00097K_0001 VISTA 1:32956893-33558359
CIL_0008F1 CIL_0008F1_0001 VISTA 1:33063188-33665346

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097877 Zscan20-001 protein_coding Mus_musculus 0 2372
ENSMUST00000135309 Zscan20-002 nonsense_mediated_decay Mus_musculus 0 1646
ENSMUST00000165640 Zfp113-201 protein_coding Mus_musculus 2e-21 110
ENSMUST00000049393 Zfp113-001 protein_coding Mus_musculus 2e-21 110
ENSMUST00000084276 Zscan20-006 processed_transcript Mus_musculus 2e-21 110
ENSMUST00000116671 Gm14644-001 processed_pseudogene Mus_musculus 5e-17 95
ENSMUST00000134473 Zfp664-005 processed_transcript Mus_musculus 0.000000000001 81
ENSMUST00000111417 Zfp664-001 protein_coding Mus_musculus 0.000000000001 81

Loading