C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin, light chain 1, alkali; skeletal, fast
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000352451 MYL1-001 ENSG00000168530 9606 - 2:210290150-210315190 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastKidneyLiverMuscleOvaryTestisENST00000352451
Transcript ID Brain Breast Kidney Liver Muscle Ovary Testis
ENST00000352451 0.045±0.00 16.008±15.86 0.076±0.00 2.807±0.00 803.170±0.00 0.161±0.01 1.915±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AJ CIL_0000AJ_0002 CGP 2:210290150-210477652

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005829 TAS cytosol
GO:0005859 NAS muscle myosin complex
GO:0006936 IDA muscle contraction
GO:0008307 NAS structural constituent of muscle
GO:0030016 IDA myofibril
GO:0030017 NAS sarcomere
GO:0030049 NAS muscle filament sliding
GO:0043292 IEA contractile fiber
GO:0060048 IEA cardiac muscle contraction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027151 Myl1-001 protein_coding Mus_musculus 0 758
ENSMUST00000150542 Myl1-003 processed_transcript Mus_musculus 0 560
ENSMUST00000119429 Myl1-002 protein_coding Mus_musculus 0 538
ENSMUST00000186202 Myl1-007 protein_coding Mus_musculus 0 538
ENSMUST00000120415 Myl1-004 protein_coding Mus_musculus 0 479
ENSMUST00000160100 Myl1-005 protein_coding Mus_musculus 0 472
ENSMUST00000186346 Myl1-008 retained_intron Mus_musculus 2.99878e-43 180
ENSMUST00000151328 Myl1-006 retained_intron Mus_musculus 5e-34 148

Loading