C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 41, E3 ubiquitin protein ligase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000345093 RNF41-001 ENSG00000181852 9606 - 12:56202175-56221921 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastMuscleOvaryPlacentaTestisENST00000345093
Transcript ID Brain Breast Muscle Ovary Placenta Testis
ENST00000345093 1.204±0.00 0.932±0.00 0.255±0.00 1.176±0.09 0.483±0.00 1.277±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IDA protein polyubiquitination
GO:0004842 IEA:IDA ubiquitin-protein transferase activity
GO:0005128 IEA erythropoietin receptor binding
GO:0005135 IEA interleukin-3 receptor binding
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0008270 IEA zinc ion binding
GO:0008285 IDA negative regulation of cell proliferation
GO:0010468 IEA regulation of gene expression
GO:0010498 IDA proteasomal protein catabolic process
GO:0016567 IEA protein ubiquitination
GO:0016881 IEA acid-amino acid ligase activity
GO:0030336 IMP negative regulation of cell migration
GO:0031386 IEA protein tag
GO:0043408 IDA regulation of MAPK cascade
GO:0045619 IEA regulation of lymphocyte differentiation
GO:0045637 IEA regulation of myeloid cell differentiation
GO:0046872 IEA metal ion binding
GO:0051091 IEA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051865 IDA protein autoubiquitination
GO:0051896 IDA regulation of protein kinase B signaling
GO:0097191 IDA extrinsic apoptotic signaling pathway
GO:2000114 IEA regulation of establishment of cell polarity
GO:2000377 IMP regulation of reactive oxygen species metabolic process
GO:2000379 IMP positive regulation of reactive oxygen species metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000096386 Rnf41-201 protein_coding Mus_musculus 0 1853
ENSMUST00000171342 Rnf41-202 protein_coding Mus_musculus 0 1650
ENSMUST00000122221 Gm4772-001 processed_pseudogene Mus_musculus 0 784
ENSMUST00000121507 Gm8761-001 processed_pseudogene Mus_musculus 0 765
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000008 58

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