C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chloride channel, voltage-sensitive 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343257 CLCN1-001 ENSG00000188037 9606 + 7:143316126-143352083 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000343257
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000343257 0.006±0.00 0.033±0.00 0.023±0.00 0.497±0.00 0.006±0.00 0.012±0.00 0.014±0.00 0.108±0.00 0.051±0.00 2.758±0.00 0.117±0.00 0.035±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006VM CIL_0006VM_0001 CGP 7:143288215-143352083
CIL_0006VN CIL_0006VN_0001 CGP 7:143316126-143362770

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005247 IEA voltage-gated chloride channel activity
GO:0005254 TAS chloride channel activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0006821 IEA chloride transport
GO:0006936 TAS muscle contraction
GO:0016020 IEA membrane
GO:0019227 IEA neuronal action potential propagation
GO:0030554 IEA adenyl nucleotide binding
GO:0034220 TAS ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0034765 IEA regulation of ion transmembrane transport
GO:0042383 IEA sarcolemma
GO:0044070 IEA regulation of anion transport
GO:0055085 TAS:IEA transmembrane transport
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031894 Clcn1-001 protein_coding Mus_musculus 0 3145
ENSMUST00000165780 Clcn1-006 nonsense_mediated_decay Mus_musculus 0 2961
ENSMUST00000169024 Clcn1-004 nonsense_mediated_decay Mus_musculus 0 2259
ENSMUST00000170028 Clcn1-002 nonsense_mediated_decay Mus_musculus 0 2165
ENSMUST00000168660 Clcn1-005 nonsense_mediated_decay Mus_musculus 0 2137
ENSMUST00000163936 Clcn1-003 protein_coding Mus_musculus 0 1984
ENSMUST00000114684 Clcn1-008 protein_coding Mus_musculus 0 1531
ENSMUST00000164091 Clcn1-007 nonsense_mediated_decay Mus_musculus 0 1463
ENSMUST00000169902 Clcn1-010 retained_intron Mus_musculus 0 248
ENSMUST00000163235 Clcn1-009 nonsense_mediated_decay Mus_musculus 2e-40 172

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