C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin, beta, non-erythrocytic 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000333896 SPTBN1-002 ENSG00000115306 9606 + 2:54558394-54662308 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartLungMuscleOvaryENST00000333896
Transcript ID Adrenal Bladder Breast Colon Heart Lung Muscle Ovary
ENST00000333896 6.812±0.00 5.735±0.00 8.104±0.00 6.705±0.00 16.385±6.27 19.984±0.00 2.222±0.00 20.563±7.92

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000281 IMP mitotic cytokinesis
GO:0003779 IEA actin binding
GO:0005200 IMP:IEA structural constituent of cytoskeleton
GO:0005515 IPI:IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005543 IEA phospholipid binding
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0007009 IMP plasma membrane organization
GO:0007411 TAS axon guidance
GO:0008091 IEA spectrin
GO:0014731 NAS spectrin-associated cytoskeleton
GO:0030506 IPI ankyrin binding
GO:0030673 ISS axolemma
GO:0043001 IMP Golgi to plasma membrane protein transport
GO:0044822 IDA poly(A) RNA binding
GO:0051693 IEA actin filament capping
GO:0070062 IDA extracellular vesicular exosome
GO:0071709 IMP membrane assembly
GO:0072661 IMP protein targeting to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102838 Sptbn1-002 protein_coding Mus_musculus 0 8787
ENSMUST00000011877 Sptbn1-201 protein_coding Mus_musculus 0 8242
ENSMUST00000006629 Sptbn1-001 protein_coding Mus_musculus 0 8242
ENSMUST00000124231 Sptbn1-007 protein_coding Mus_musculus 0 8080
ENSDART00000098492 protein_coding Danio_rerio 0 2706
ENSMUST00000166101 Sptb-002 protein_coding Mus_musculus 0 894
ENSMUST00000021458 Sptb-001 protein_coding Mus_musculus 0 894
ENSMUST00000172269 Sptbn4-201 protein_coding Mus_musculus 0 531
ENSMUST00000011895 Sptbn4-001 protein_coding Mus_musculus 0 531
ENSMUST00000127209 Sptbn1-004 retained_intron Mus_musculus 0 379

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