C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD23 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000316856 RAD23A-001 ENSG00000179262 9606 + 19:12945876-12953623 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLiverLungMuscleOvaryENST00000316856
Transcript ID Breast Colon Heart Liver Lung Muscle Ovary
ENST00000316856 2.194±0.00 1.551±0.00 2.003±0.00 1.265±0.00 1.646±0.00 11.349±0.00 0.975±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VV CIL_0007VV_0001 VISTA 19:12752697-13356541
CIL_0007ZV CIL_0007ZV_0001 VISTA 19:12767682-13372012

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0003684 IEA damaged DNA binding
GO:0003697 TAS single-stranded DNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006289 IDA:IEA nucleotide-excision repair
GO:0016032 IEA viral process
GO:0031593 IDA polyubiquitin binding
GO:0032434 IDA regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043161 IEA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045070 IMP positive regulation of viral genome replication
GO:1990381 IPI ubiquitin-specific protease binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003911 Rad23a-002 protein_coding Mus_musculus 0 1731
ENSMUST00000109761 Rad23a-001 protein_coding Mus_musculus 0 1716
ENSMUST00000128035 Rad23a-003 protein_coding Mus_musculus 0 1186
ENSMUST00000125711 Rad23a-004 retained_intron Mus_musculus 0 568
ENSMUST00000144675 Rad23a-007 protein_coding Mus_musculus 0 510
ENSMUST00000144994 Rad23a-005 retained_intron Mus_musculus 0 431
ENSMUST00000036734 Gadd45gip1-001 protein_coding Mus_musculus 0 327
ENSDART00000124615 rad23b-201 protein_coding Danio_rerio 0 206

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