C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 41 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000310301 VPS41-001 ENSG00000006715 9606 - 7:38722963-38909229 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000310301
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000310301 2.675±0.00 2.504±0.00 6.417±1.69 3.798±0.35 2.984±0.45 1.236±0.61 2.053±1.19 2.617±0.00 0.214±0.16 2.019±0.60 2.255±0.66 3.370±0.53

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005765 IDA lysosomal membrane
GO:0005769 IEA early endosome
GO:0005770 IEA late endosome
GO:0005798 IMP Golgi-associated vesicle
GO:0005829 IDA cytosol
GO:0006886 IEA intracellular protein transport
GO:0008017 IEA microtubule binding
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0015630 IEA microtubule cytoskeleton
GO:0016020 IDA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030897 IDA HOPS complex
GO:0048193 IMP Golgi vesicle transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072961 Vps41-201 protein_coding Mus_musculus 0 3437
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000000001 71
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000008 58

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