C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TSEN34 tRNA splicing endonuclease subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000302937 TSEN34-001 ENSG00000170892 9606 + 19:54190268-54194536 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000302937
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000302937 1.088±0.00 0.836±0.00 0.703±0.00 0.410±0.07 0.182±0.00 0.478±0.00 1.653±0.00 0.331±0.00 0.492±0.00 1.627±1.03 6.492±0.00 2.175±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005M7 CIL_0005M7_0001 CGP 19:54173412-54194536
CIL_0005M6 CIL_0005M6_0001 CGP 19:54189938-54249003

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000213 IEA tRNA-intron endonuclease activity
GO:0000214 IEA tRNA-intron endonuclease complex
GO:0000379 IEA tRNA-type intron splice site recognition and cleavage
GO:0003676 IEA nucleic acid binding
GO:0006388 IEA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 IEA mRNA processing
GO:0016829 IEA lyase activity
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038521 Tsen34-002 protein_coding Mus_musculus 0 922
ENSMUST00000108630 Tsen34-001 protein_coding Mus_musculus 0 889
ENSMUST00000108627 Tsen34-004 protein_coding Mus_musculus 0 885
ENSMUST00000142461 4930526A20Rik-002 processed_transcript Mus_musculus 0 845
ENSMUST00000134228 4930526A20Rik-001 transcribed_processed_pseudogene Mus_musculus 0 824
ENSMUST00000155060 Tsen34-009 nonsense_mediated_decay Mus_musculus 0 758
ENSMUST00000108629 Tsen34-003 protein_coding Mus_musculus 0 704
ENSMUST00000142713 Tsen34-007 protein_coding Mus_musculus 0 453
ENSMUST00000123088 Tsen34-006 protein_coding Mus_musculus 0 438
ENSMUST00000137204 Tsen34-008 protein_coding Mus_musculus 0 392

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