C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synovial sarcoma translocation, chromosome 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000269137 SS18-001 ENSG00000141380 9606 - 18:26018014-26090901 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastHeartLiverMuscleOvaryENST00000269137
Transcript ID Bladder Breast Heart Liver Muscle Ovary
ENST00000269137 3.123±0.00 4.659±0.00 2.584±0.00 4.224±0.00 1.507±0.00 6.621±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LU CIL_0007LU_0001 UCNEbase 18:24628254-26687255
CIL_0008CS CIL_0008CS_0001 VISTA 18:25552759-26154861
CIL_0006ET CIL_0006ET_0001 CGP 18:26016253-26193355

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092041 Ss18-203 protein_coding Mus_musculus 0 1903
ENSMUST00000118646 Gm1826-001 processed_pseudogene Mus_musculus 0 1458
ENSMUST00000040924 Ss18-201 protein_coding Mus_musculus 0 1266
ENSMUST00000040964 Ss18-202 protein_coding Mus_musculus 0 641

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