C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM homeobox 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261731 LHX5-001 ENSG00000089116 9606 - 12:113462034-113472072 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000261731
Transcript ID Ovary Placenta Testis
ENST00000261731 0.267±0.28 0.956±1.07 0.072±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000842 CIL_000842_0001 VISTA 12:113363390-113966000

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007267 IEA cell-cell signaling
GO:0008270 IEA zinc ion binding
GO:0021527 IEA spinal cord association neuron differentiation
GO:0021549 IEA cerebellum development
GO:0021702 IEA cerebellar Purkinje cell differentiation
GO:0021766 IEA hippocampus development
GO:0021846 IEA cell proliferation in forebrain
GO:0021879 IEA forebrain neuron differentiation
GO:0021937 IEA cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation
GO:0042127 IEA regulation of cell proliferation
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 IEA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031591 Lhx5-001 protein_coding Mus_musculus 0 2017
ENSDART00000021159 lhx1b-001 protein_coding Danio_rerio 0 300

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