C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox C6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000243108 HOXC6-001 ENSG00000197757 9606 + 12:54028358-54030823 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000243108
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000243108 8.592±0.00 4.914±0.00 2.414±0.00 0.012±0.00 2.696±1.93 2.080±0.00 0.021±0.00 9.606±0.00 0.195±0.00 18.143±10.69 3.089±0.00 4.637±1.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003714 TAS transcription corepressor activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0007275 TAS multicellular organismal development
GO:0009952 IEA anterior/posterior pattern specification
GO:0043565 IEA sequence-specific DNA binding
GO:0048706 IEA embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001711 Hoxc6-001 protein_coding Mus_musculus 0 2130
ENSMUST00000173210 Hoxc6-002 processed_transcript Mus_musculus 0 686
ENSMUST00000173421 Hoxc6-003 processed_transcript Mus_musculus 0 422

Loading