C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 5B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000235790 KDM5B-002 ENSG00000117139 9606 - 1:202729905-202807299 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000235790
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000235790 3.167±0.00 2.626±0.00 5.324±0.00 2.227±0.00 0.445±0.00 1.135±0.00 4.548±0.00 3.055±0.00 0.447±0.00 4.018±0.00 2.373±0.00 51.945±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112198 Kdm5b-003 protein_coding Mus_musculus 0 4883
ENSMUST00000047714 Kdm5b-001 protein_coding Mus_musculus 0 4883
ENSMUST00000112197 Kdm5b-002 retained_intron Mus_musculus 0 1797
ENSMUST00000133725 Kdm5b-004 retained_intron Mus_musculus 0 612
ENSMUST00000082177 Kdm5c-004 protein_coding Mus_musculus 0 420
ENSMUST00000112588 Kdm5c-001 protein_coding Mus_musculus 0 420
ENSMUST00000112584 Kdm5c-002 protein_coding Mus_musculus 0 420
ENSMUST00000186128 Kdm5b-005 retained_intron Mus_musculus 0 226

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