C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TBC1 domain family, member 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000221543 TBC1D17-001 ENSG00000104946 9606 + 19:49877425-49888744 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyMuscleOvaryPlacentaTestisENST00000221543
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Muscle Ovary Placenta Testis
ENST00000221543 15.368±0.00 14.480±0.00 15.504±0.00 14.503±0.00 10.722±0.00 5.460±0.00 11.694±0.00 18.433±0.00 16.774±0.00 14.816±0.00 7.102±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 IEA Rab GTPase activator activity
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0006914 IEA autophagy
GO:0015031 IEA protein transport
GO:0031410 IEA cytoplasmic vesicle
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0042147 IMP retrograde transport, endosome to Golgi

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047085 Tbc1d17-002 protein_coding Mus_musculus 0 1997
ENSMUST00000145959 Tbc1d17-001 nonsense_mediated_decay Mus_musculus 0 1919
ENSMUST00000139947 Tbc1d17-003 retained_intron Mus_musculus 0 1652
ENSMUST00000130081 Tbc1d17-004 retained_intron Mus_musculus 0 1286
ENSMUST00000153161 Tbc1d17-007 retained_intron Mus_musculus 0 464

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