C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: reticulon 4 receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000043402 RTN4R-001 ENSG00000040608 9606 - 22:20241415-20268531 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastLungOvaryPlacentaENST00000043402
Transcript ID Adrenal Brain Breast Lung Ovary Placenta
ENST00000043402 0.543±0.00 4.384±0.00 0.891±0.00 1.680±0.00 8.454±0.00 0.700±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086B CIL_00086B_0001 VISTA 22:20120771-20724717

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 NAS receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005886 TAS plasma membrane
GO:0007409 NAS axonogenesis
GO:0009986 IDA cell surface
GO:0030426 IEA growth cone
GO:0031225 IEA anchored component of membrane
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0050770 TAS regulation of axonogenesis
GO:0050771 TAS negative regulation of axonogenesis
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000059589 Rtn4r-001 protein_coding Mus_musculus 0 1735

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