C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183850 Kcnn2-001 ENSMUSG00000054477 10090 + 18:45269005-45685883 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000183850
Transcript ID Adipose Bladder Brain Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000183850 0.157±0.10 2.214±0.57 1.830±0.53 0.869±0.21 0.182±0.05 0.379±0.44 0.387±0.14 0.251±0.03 0.042±0.03 0.020±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UP CIL_0004UP_0002 CGP 18:44828665-45686024
CIL_0004UO CIL_0004UO_0002 CGP 18:45268860-46212607

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IDA ion channel activity
GO:0005516 IBA calmodulin binding
GO:0005790 IDA smooth endoplasmic reticulum
GO:0005886 IDA plasma membrane
GO:0006811 IDA ion transport
GO:0016021 IEA integral component of membrane
GO:0016286 IBA small conductance calcium-activated potassium channel activity
GO:0030018 IDA Z disc
GO:0030315 IDA T-tubule
GO:0043025 IBA neuronal cell body
GO:0043197 IDA dendritic spine
GO:0071805 IBA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264773 KCNN2-201 protein_coding Homo_sapiens 0 3690
ENST00000503706 KCNN2-002 protein_coding Homo_sapiens 0 1568
ENST00000505491 KCNN2-004 nonsense_mediated_decay Homo_sapiens 0 405
ENST00000506812 KCNN2-003 retained_intron Homo_sapiens 0 453
ENST00000507750 KCNN2-005 processed_transcript Homo_sapiens 0 717
ENST00000512097 KCNN2-001 protein_coding Homo_sapiens 0 4433
ENST00000610748 KCNN2-202 protein_coding Homo_sapiens 0 1570

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