C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182583 Rnf4-005 ENSMUSG00000029110 10090 + 5:34336685-34350030 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000182583
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000182583 77.199±0.00 115.839±0.00 388.866±91.55 272.294±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00057G CIL_00057G_0002 CGP 5:34336289-34486456

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0008134 IPI transcription factor binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314289 RNF4-001 protein_coding Homo_sapiens 0 431
ENST00000413346 RP11-423F24.3-001 processed_pseudogene Homo_sapiens 0 372
ENST00000502316 RNF4-008 protein_coding Homo_sapiens 0 431
ENST00000506706 RNF4-003 protein_coding Homo_sapiens 0 431
ENST00000507247 RNF4-020 protein_coding Homo_sapiens 0 296
ENST00000508235 RNF4-022 nonsense_mediated_decay Homo_sapiens 3e-21 106
ENST00000509258 RNF4-002 protein_coding Homo_sapiens 0 296
ENST00000509388 RNF4-007 processed_transcript Homo_sapiens 0 394
ENST00000511600 RNF4-005 protein_coding Homo_sapiens 0 431
ENST00000511843 RNF4-011 processed_transcript Homo_sapiens 0 394
ENST00000511859 RNF4-004 protein_coding Homo_sapiens 0 296
ENST00000513284 RNF4-019 nonsense_mediated_decay Homo_sapiens 7e-22 108
ENST00000513643 RNF4-018 processed_transcript Homo_sapiens 0 268
ENST00000541204 RNF4-201 protein_coding Homo_sapiens 0 296

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