C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000174387 Usp3-011 ENSMUSG00000032376 10090 - 9:66518075-66593006 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderLiverMuscleOvaryPlacentaTestisENSMUST00000174387
Transcript ID Bladder Liver Muscle Ovary Placenta Testis
ENSMUST00000174387 3.152±0.00 1.524±0.04 1.414±0.31 9.859±2.18 3.521±1.73 3.199±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OX CIL_0004OX_0002 CGP 9:66508459-66593142

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008234 IEA cysteine-type peptidase activity
GO:0008270 IEA zinc ion binding
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268049 USP3-201 protein_coding Homo_sapiens 0 1965
ENST00000380324 USP3-001 protein_coding Homo_sapiens 0 1965
ENST00000538686 USP3-005 nonsense_mediated_decay Homo_sapiens 0 1967
ENST00000540797 USP3-202 protein_coding Homo_sapiens 0 2263
ENST00000557884 USP3-011 nonsense_mediated_decay Homo_sapiens 0 403
ENST00000558157 USP3-003 nonsense_mediated_decay Homo_sapiens 0 1965
ENST00000558218 USP3-017 processed_transcript Homo_sapiens 0 603
ENST00000558285 USP3-004 protein_coding Homo_sapiens 0 1759
ENST00000558925 USP3-013 retained_intron Homo_sapiens 1e-38 163
ENST00000559192 USP3-002 nonsense_mediated_decay Homo_sapiens 0 1965
ENST00000559257 USP3-008 nonsense_mediated_decay Homo_sapiens 0 1965
ENST00000559276 USP3-010 protein_coding Homo_sapiens 3e-21 106
ENST00000559711 USP3-006 protein_coding Homo_sapiens 0 1956
ENST00000559718 USP3-019 retained_intron Homo_sapiens 0 599
ENST00000559771 USP3-009 protein_coding Homo_sapiens 0 220
ENST00000559873 USP3-015 nonsense_mediated_decay Homo_sapiens 0 562
ENST00000560070 USP3-014 protein_coding Homo_sapiens 0 645
ENST00000560202 USP3-007 nonsense_mediated_decay Homo_sapiens 0 654
ENST00000561326 USP3-016 processed_transcript Homo_sapiens 0 503
ENST00000561381 USP3-018 retained_intron Homo_sapiens 0 691
ENST00000561442 USP3-012 protein_coding Homo_sapiens 0 196

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