C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: choline kinase beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171666 Chkb-008 ENSMUSG00000022617 10090 - 15:89426441-89428493 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverOvaryPlacentaENSMUST00000171666
Transcript ID Brain Liver Ovary Placenta
ENSMUST00000171666 4.800±0.00 14.445±0.00 21.033±7.52 15.535±5.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028I CIL_00028I_0002 CGP 15:89390174-89425863
CIL_0002HR CIL_0002HR_0002 CGP 15:89416405-89429908

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004103 IMP choline kinase activity
GO:0006656 IMP phosphatidylcholine biosynthetic process
GO:0006657 IMP CDP-choline pathway
GO:0007517 IMP muscle organ development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000406938 CHKB-001 protein_coding Homo_sapiens 0 472
ENST00000452668 CHKB-CPT1B-002 processed_transcript Homo_sapiens 6.99949e-42 174
ENST00000453634 CHKB-CPT1B-001 nonsense_mediated_decay Homo_sapiens 0 243
ENST00000463053 CHKB-010 processed_transcript Homo_sapiens 0 243
ENST00000464225 CHKB-012 processed_transcript Homo_sapiens 0 494
ENST00000468532 CHKB-007 retained_intron Homo_sapiens 0 243
ENST00000471515 CHKB-011 processed_transcript Homo_sapiens 0 285
ENST00000476289 CHKB-006 retained_intron Homo_sapiens 0 243
ENST00000479003 CHKB-004 retained_intron Homo_sapiens 0 287
ENST00000481673 CHKB-003 retained_intron Homo_sapiens 0 472
ENST00000484266 CHKB-005 retained_intron Homo_sapiens 0 387
ENST00000489453 CHKB-009 retained_intron Homo_sapiens 0 235
ENST00000492556 CHKB-CPT1B-003 retained_intron Homo_sapiens 0 287
ENST00000492582 CHKB-002 retained_intron Homo_sapiens 0 472

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