C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169783 Kcnn2-202 ENSMUSG00000054477 10090 + 18:45560154-45685882 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLiverMuscleOvaryPlacentaTestisENSMUST00000169783
Transcript ID Brain Breast Liver Muscle Ovary Placenta Testis
ENSMUST00000169783 15.999±0.00 0.105±0.00 0.020±0.00 0.302±0.10 0.717±0.07 0.099±0.03 0.136±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UP CIL_0004UP_0002 CGP 18:44828665-45686024
CIL_0004UO CIL_0004UO_0002 CGP 18:45268860-46212607

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IDA ion channel activity
GO:0005516 IBA calmodulin binding
GO:0005790 IDA smooth endoplasmic reticulum
GO:0005886 IDA plasma membrane
GO:0006811 IDA ion transport
GO:0016021 IEA integral component of membrane
GO:0016286 IBA small conductance calcium-activated potassium channel activity
GO:0043025 IBA neuronal cell body
GO:0043197 IDA dendritic spine
GO:0071805 IBA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264773 KCNN2-201 protein_coding Homo_sapiens 0 1567
ENST00000503706 KCNN2-002 protein_coding Homo_sapiens 0 1570
ENST00000505491 KCNN2-004 nonsense_mediated_decay Homo_sapiens 0 409
ENST00000506812 KCNN2-003 retained_intron Homo_sapiens 0 453
ENST00000507750 KCNN2-005 processed_transcript Homo_sapiens 0 1109
ENST00000512097 KCNN2-001 protein_coding Homo_sapiens 0 1567
ENST00000610748 KCNN2-202 protein_coding Homo_sapiens 0 2333

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