C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif-containing 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165015 Trim13-202 ENSMUSG00000035235 10090 + 14:61598226-61605946 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonLiverOvaryPlacentaTestisENSMUST00000165015
Transcript ID Adrenal Colon Liver Ovary Placenta Testis
ENSMUST00000165015 1.067±0.42 0.711±0.00 0.807±0.46 1.755±1.08 0.787±0.34 5.153±0.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004PF CIL_0004PF_0003 CGP 14:61531993-61605946
CIL_0000UW CIL_0000UW_0002 CGP 14:61598226-61611916

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0004871 IEA signal transducer activity
GO:0005737 IDA cytoplasm
GO:0005789 ISS endoplasmic reticulum membrane
GO:0007165 IEA signal transduction
GO:0008270 IEA zinc ion binding
GO:0010332 ISS response to gamma radiation
GO:0010942 IEA positive regulation of cell death
GO:0016021 IEA integral component of membrane
GO:0016239 ISS positive regulation of macroautophagy
GO:0016874 IEA ligase activity
GO:0030433 ISS ER-associated ubiquitin-dependent protein catabolic process
GO:0032897 IEA negative regulation of viral transcription
GO:0043123 IEA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045087 IEA innate immune response
GO:0051092 IEA positive regulation of NF-kappaB transcription factor activity
GO:0051865 ISS protein autoubiquitination
GO:0097038 ISS perinuclear endoplasmic reticulum
GO:1902187 IEA negative regulation of viral release from host cell

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356017 TRIM13-006 protein_coding Homo_sapiens 0 1358
ENST00000378182 TRIM13-005 protein_coding Homo_sapiens 0 1380
ENST00000378183 TRIM13-004 protein_coding Homo_sapiens 0 1005
ENST00000420995 TRIM13-001 protein_coding Homo_sapiens 0 1380
ENST00000442421 TRIM13-002 protein_coding Homo_sapiens 0 492
ENST00000457662 TRIM13-003 protein_coding Homo_sapiens 0 1363
ENST00000571108 RP11-417N10.3-001 unprocessed_pseudogene Homo_sapiens 0 200

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