C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, AMPA4 (alpha 4)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163309 Gria4-203 ENSMUSG00000025892 10090 - 9:4478263-4796234 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverOvaryPlacentaENSMUST00000163309
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Ovary Placenta
ENSMUST00000163309 0.800±0.65 0.316±0.22 4.686±0.68 0.090±0.04 0.284±0.11 0.007±0.00 0.280±0.10 0.036±0.01 0.287±0.16 0.042±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YT CIL_0000YT_0002 CGP 9:4383535-4796234

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004971 IBA alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
GO:0005234 IBA extracellular-glutamate-gated ion channel activity
GO:0005515 IPI protein binding
GO:0030425 IBA dendrite
GO:0032281 IDA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0034220 IBA ion transmembrane transport
GO:0035235 IBA ionotropic glutamate receptor signaling pathway
GO:0035249 IBA synaptic transmission, glutamatergic
GO:0045202 IDA synapse
GO:0045211 IBA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282499 GRIA4-201 protein_coding Homo_sapiens 0 1779
ENST00000393125 GRIA4-001 protein_coding Homo_sapiens 0 2045
ENST00000393127 GRIA4-202 protein_coding Homo_sapiens 0 1779
ENST00000428631 GRIA4-004 protein_coding Homo_sapiens 0 2030
ENST00000525032 GRIA4-002 retained_intron Homo_sapiens 0 985
ENST00000525187 GRIA4-006 protein_coding Homo_sapiens 0 1657
ENST00000525921 GRIA4-011 protein_coding Homo_sapiens 0 431
ENST00000527177 GRIA4-009 protein_coding Homo_sapiens 0 468
ENST00000527669 GRIA4-003 protein_coding Homo_sapiens 0 481
ENST00000527687 GRIA4-012 processed_transcript Homo_sapiens 0 725
ENST00000530497 GRIA4-005 protein_coding Homo_sapiens 0 1657
ENST00000531011 GRIA4-013 protein_coding Homo_sapiens 0 741
ENST00000531986 GRIA4-010 protein_coding Homo_sapiens 0 431

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