C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle transport through interaction with t-SNAREs 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162569 Vti1b-004 ENSMUSG00000021124 10090 - 12:79156329-79165139 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartMuscleOvaryPlacentaENSMUST00000162569
Transcript ID Brain Breast Heart Muscle Ovary Placenta
ENSMUST00000162569 128.111±0.00 14.382±0.00 6.358±0.00 10.273±1.00 39.781±4.15 50.478±8.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CL CIL_0002CL_0002 CGP 12:79080673-79156301
CIL_0001KL CIL_0001KL_0003 CGP 12:79130777-79172667
CIL_0001MK CIL_0001MK_0002 CGP 12:79156017-79192293

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 ISO SNARE binding
GO:0005515 IPI protein binding
GO:0005794 IDA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216456 VTI1B-002 nonsense_mediated_decay Homo_sapiens 0 438
ENST00000427516 VTI1BP4-001 processed_pseudogene Homo_sapiens 0 243
ENST00000553306 RP11-1012A1.4-001 nonsense_mediated_decay Homo_sapiens 2e-33 147
ENST00000553619 VTI1B-004 retained_intron Homo_sapiens 0 357
ENST00000554659 VTI1B-001 protein_coding Homo_sapiens 0 438
ENST00000555543 VTI1B-003 nonsense_mediated_decay Homo_sapiens 0 318

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