C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161162 Arhgef10-003 ENSMUSG00000071176 10090 + 8:14911724-14961202 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000161162
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000161162 7.538±0.00 8.440±0.00 6.362±0.52 4.626±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GL CIL_0007GL_0003 CGP 8:14881335-15001085
CIL_0000LF CIL_0000LF_0002 CGP 8:14911663-15033333

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0032321 IEA positive regulation of Rho GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111966 arhgef10lb-201 protein_coding Danio_rerio 5e-38 163
ENSDART00000134741 arhgef10lb-001 protein_coding Danio_rerio 5e-38 163
ENST00000349830 ARHGEF10-003 protein_coding Homo_sapiens 0 1321
ENST00000398560 ARHGEF10-201 protein_coding Homo_sapiens 0 743
ENST00000398564 ARHGEF10-202 protein_coding Homo_sapiens 0 1314
ENST00000518288 ARHGEF10-001 protein_coding Homo_sapiens 0 1310
ENST00000520359 ARHGEF10-002 protein_coding Homo_sapiens 0 743
ENST00000520972 ARHGEF10-006 retained_intron Homo_sapiens 0 743
ENST00000522435 ARHGEF10-004 protein_coding Homo_sapiens 0 721
ENST00000523711 ARHGEF10-005 retained_intron Homo_sapiens 0 743
ENST00000610399 ARHGEF10-203 protein_coding Homo_sapiens 0 1314
ENST00000616718 ARHGEF10-204 protein_coding Homo_sapiens 0 743
ENST00000619613 ARHGEF10-205 protein_coding Homo_sapiens 0 1321

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