C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 4b (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000147705 Vps4b-005 ENSMUSG00000009907 10090 - 1:106777298-106782794 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryPlacentaTestisENSMUST00000147705
Transcript ID Brain Muscle Ovary Placenta Testis
ENSMUST00000147705 17.872±0.00 4.126±0.56 40.655±3.49 30.857±8.44 12.075±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000B7 CIL_0000B7_0003 CGP 1:106720459-106796728
CIL_00076J CIL_00076J_0002 CGP 1:106764071-106883348

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000238497 VPS4B-001 protein_coding Homo_sapiens 0 881
ENST00000589604 VPS4B-005 retained_intron Homo_sapiens 0 880
ENST00000591383 VPS4B-007 processed_transcript Homo_sapiens 0 632
ENST00000591475 VPS4B-006 retained_intron Homo_sapiens 0 881

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