C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: four and a half LIM domains 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145942 Fhl3-003 ENSMUSG00000032643 10090 + 4:124700719-124708077 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENSMUST00000145942
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENSMUST00000145942 1.879±1.00 4.910±1.09 0.366±0.13 10.241±4.99 1.673±0.52 1.007±0.00 1.239±0.23 4.420±2.00 5.067±2.79 6.360±4.73 0.150±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008II CIL_0008II_0002 VISTA 4:124101702-124703017
CIL_0007QK CIL_0007QK_0002 VISTA 4:124155077-124756356
CIL_0008ZP CIL_0008ZP_0002 VISTA 4:124158302-124761497
CIL_0007QI CIL_0007QI_0002 VISTA 4:124177456-124779254
CIL_000892 CIL_000892_0002 VISTA 4:124220131-124821365
CIL_0008EP CIL_0008EP_0002 VISTA 4:124226300-124827138
CIL_0008NZ CIL_0008NZ_0002 VISTA 4:124251046-124852185
CIL_0007UI CIL_0007UI_0002 VISTA 4:124315408-124916812
CIL_00095Y CIL_00095Y_0002 VISTA 4:124371949-124972943
CIL_0001ZV CIL_0001ZV_0002 CGP 4:124678160-124708611

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0003779 IDA actin binding
GO:0005634 IDA nucleus
GO:0008270 IEA zinc ion binding
GO:0030018 IDA Z disc
GO:0030036 IDA actin cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373016 FHL3-001 protein_coding Homo_sapiens 0 479
ENST00000475084 FHL3-005 processed_transcript Homo_sapiens 0 521
ENST00000477194 FHL3-004 processed_transcript Homo_sapiens 0 412
ENST00000483132 FHL3-003 processed_transcript Homo_sapiens 0 412
ENST00000485803 FHL3-002 processed_transcript Homo_sapiens 0 315

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