C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox D4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144040 Hoxd4-002 ENSMUSG00000101174 10090 + 2:74711929-74728868 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungMuscleOvaryENSMUST00000144040
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Muscle Ovary
ENSMUST00000144040 10.549±2.31 16.777±6.87 3.483±0.68 2.956±0.34 7.880±1.73 0.022±0.00 0.341±0.00 0.561±0.05 9.059±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0002 UCNEbase 2:73834549-75665799
CIL_00090A CIL_00090A_0002 VISTA 2:74189927-74791300
CIL_0008JZ CIL_0008JZ_0002 VISTA 2:74350860-74952235
CIL_00017M CIL_00017M_0002 CGP 2:74704615-74748442
CIL_0006SE CIL_0006SE_0002 CGP 2:74711927-74748442

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222728 HOXA6-001 protein_coding Homo_sapiens 0.00000000000008 82
ENST00000239144 HOXB8-001 protein_coding Homo_sapiens 0.0000000000002 82
ENST00000239151 HOXB5-001 protein_coding Homo_sapiens 1e-20 106
ENST00000249440 HOXD3-001 protein_coding Homo_sapiens 0.00000002 66
ENST00000306324 HOXD4-001 protein_coding Homo_sapiens 0 604
ENST00000317201 HOXA3-002 protein_coding Homo_sapiens 0.00000008 64
ENST00000332503 HOXB4-001 protein_coding Homo_sapiens 4e-27 128
ENST00000396352 HOXA3-001 protein_coding Homo_sapiens 0.0000001 64
ENST00000410016 HOXD3-004 protein_coding Homo_sapiens 0.00000002 66
ENST00000459979 HOXD3-003 processed_transcript Homo_sapiens 9e-24 115
ENST00000468418 HOXD3-001 nonsense_mediated_decay Homo_sapiens 0 401
ENST00000498634 HOXB8-003 protein_coding Homo_sapiens 0.00000000000004 82
ENST00000521478 HOXA6-002 processed_transcript Homo_sapiens 0.00000000000007 82
ENST00000576562 HOXB8-002 protein_coding Homo_sapiens 0.00000000000006 82
ENST00000612286 HOXA3-201 protein_coding Homo_sapiens 0.0000001 64

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