C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mitogen-activated protein kinase kinase 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140301 Map2k4-001 ENSMUSG00000033352 10090 - 11:65696288-65788285 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalOvaryPlacentaENSMUST00000140301
Transcript ID Adrenal Ovary Placenta
ENSMUST00000140301 12.996±1.43 12.456±0.00 18.577±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YN CIL_0007YN_0002 VISTA 11:65135465-65736246
CIL_0008WK CIL_0008WK_0002 VISTA 11:65348906-65951643

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000165 IPI MAPK cascade
GO:0007254 ISO JNK cascade
GO:0007257 ISO activation of JUN kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000058834 map2k4a-002 protein_coding Danio_rerio 0 383
ENSDART00000130761 map2k4a-001 protein_coding Danio_rerio 0 383
ENSDART00000093037 map2k4a-003 protein_coding Danio_rerio 0 383
ENST00000353533 MAP2K4-001 protein_coding Homo_sapiens 0 809
ENST00000415385 MAP2K4-002 protein_coding Homo_sapiens 0 809
ENST00000438453 MAP2K4P1-001 transcribed_processed_pseudogene Homo_sapiens 0 682
ENST00000536413 MAP2K4-005 retained_intron Homo_sapiens 4e-27 128
ENST00000538465 MAP2K4-008 nonsense_mediated_decay Homo_sapiens 0 427
ENST00000579089 MAP2K4-009 processed_transcript Homo_sapiens 0 771
ENST00000581941 MAP2K4-003 processed_transcript Homo_sapiens 0 723
ENST00000582183 MAP2K4-010 nonsense_mediated_decay Homo_sapiens 0 621
ENST00000582377 MAP2K4-004 retained_intron Homo_sapiens 0 435
ENST00000582897 MAP2K4-006 processed_transcript Homo_sapiens 0 206
ENST00000585076 MAP2K4-007 retained_intron Homo_sapiens 0 335
ENST00000602305 MAP2K4-013 nonsense_mediated_decay Homo_sapiens 0 809
ENST00000602375 MAP2K4-012 nonsense_mediated_decay Homo_sapiens 0 1083
ENST00000602537 MAP2K4-015 nonsense_mediated_decay Homo_sapiens 0 809
ENST00000602584 MAP2K4P1-002 processed_transcript Homo_sapiens 0 682
ENST00000602686 MAP2K4-014 nonsense_mediated_decay Homo_sapiens 0 427
ENST00000602811 MAP2K4-011 nonsense_mediated_decay Homo_sapiens 0 809

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