C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: apurinic/apyrimidinic endonuclease 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136753 Apex1-004 ENSMUSG00000035960 10090 + 14:50924969-50926551 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryPlacentaTestisENSMUST00000136753
Transcript ID Brain Muscle Ovary Placenta Testis
ENSMUST00000136753 28.471±0.00 7.637±1.34 39.766±3.38 45.680±2.92 16.631±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Z3 CIL_0004Z3_0003 CGP 14:50906478-50927139
CIL_0001O8 CIL_0001O8_0002 CGP 14:50924968-50930856

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000737 IBA DNA catabolic process, endonucleolytic
GO:0000738 IBA DNA catabolic process, exonucleolytic
GO:0003906 IBA DNA-(apurinic or apyrimidinic site) lyase activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006284 IBA base-excision repair
GO:0008311 IBA double-stranded DNA 3'-5' exodeoxyribonuclease activity
GO:0045454 IDA cell redox homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216714 APEX1-001 protein_coding Homo_sapiens 0 595
ENST00000398030 APEX1-008 protein_coding Homo_sapiens 0 595
ENST00000438886 APEX1-003 protein_coding Homo_sapiens 0 363
ENST00000553368 APEX1-019 protein_coding Homo_sapiens 1e-31 139
ENST00000553555 APEX1-007 retained_intron Homo_sapiens 0 595
ENST00000553681 APEX1-009 protein_coding Homo_sapiens 0 595
ENST00000554325 APEX1-015 nonsense_mediated_decay Homo_sapiens 0 268
ENST00000554813 APEX1-010 processed_transcript Homo_sapiens 0 566
ENST00000555306 APEX1-012 retained_intron Homo_sapiens 0 464
ENST00000555414 APEX1-002 protein_coding Homo_sapiens 0 595
ENST00000555839 APEX1-016 protein_coding Homo_sapiens 0 492
ENST00000556054 APEX1-017 protein_coding Homo_sapiens 0 584
ENST00000557150 APEX1-021 protein_coding Homo_sapiens 0 568
ENST00000557159 APEX1-005 retained_intron Homo_sapiens 0 568
ENST00000557181 APEX1-014 protein_coding Homo_sapiens 0 359
ENST00000557344 APEX1-013 protein_coding Homo_sapiens 0 486
ENST00000557365 APEX1-020 processed_transcript Homo_sapiens 0 571
ENST00000557592 APEX1-018 protein_coding Homo_sapiens 0 568

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