C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136032 Erbb2-002 ENSMUSG00000062312 10090 + 11:98412493-98437077 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLungMuscleOvaryPlacentaTestisENSMUST00000136032
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000136032 3.328±0.79 1.683±0.66 5.488±1.03 1.636±0.16 4.027±2.33 22.276±7.02 8.106±2.78 5.798±1.48 0.431±0.00 5.369±1.52 1.992±0.56 0.571±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0002 VISTA 11:97857859-98458466
CIL_00080Z CIL_00080Z_0002 VISTA 11:98039002-98639485
CIL_00098W CIL_00098W_0002 VISTA 11:98077499-98680383
CIL_0007WH CIL_0007WH_0002 VISTA 11:98091902-98695006
CIL_0002PO CIL_0002PO_0002 CGP 11:98388677-98437716
CIL_0002PN CIL_0002PN_0002 CGP 11:98412470-98438991

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269571 ERBB2-008 protein_coding Homo_sapiens 0 2093
ENST00000406381 ERBB2-201 protein_coding Homo_sapiens 0 1988
ENST00000445658 ERBB2-004 protein_coding Homo_sapiens 0 1988
ENST00000541774 ERBB2-202 protein_coding Homo_sapiens 0 1988
ENST00000578199 ERBB2-003 protein_coding Homo_sapiens 0 1792
ENST00000578373 ERBB2-007 nonsense_mediated_decay Homo_sapiens 0 1988
ENST00000578502 ERBB2-015 protein_coding Homo_sapiens 0 448
ENST00000580074 ERBB2-018 protein_coding Homo_sapiens 0 695
ENST00000582648 ERBB2-011 nonsense_mediated_decay Homo_sapiens 0 612
ENST00000582788 ERBB2-006 retained_intron Homo_sapiens 0 614
ENST00000583038 ERBB2-010 retained_intron Homo_sapiens 0 1210
ENST00000583391 ERBB2-014 retained_intron Homo_sapiens 0 355
ENST00000584450 ERBB2-005 protein_coding Homo_sapiens 0 2093
ENST00000584601 ERBB2-001 protein_coding Homo_sapiens 0 1988
ENST00000584908 ERBB2-009 retained_intron Homo_sapiens 0 1037

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