C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: platelet-derived growth factor, C polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129285 Pdgfc-002 ENSMUSG00000028019 10090 + 3:81037172-81214034 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000129285
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000129285 4.911±2.64 3.264±0.09 0.635±0.08 2.397±0.97 0.324±0.14 2.365±0.36 0.414±0.30 0.297±0.14 0.228±0.11 6.403±2.26 0.741±0.57 1.437±0.64

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005161 IDA platelet-derived growth factor receptor binding
GO:0005576 IDA extracellular region
GO:0007171 IDA activation of transmembrane receptor protein tyrosine kinase activity
GO:0008284 IDA positive regulation of cell proliferation
GO:0009887 IGI organ morphogenesis
GO:0048008 IDA platelet-derived growth factor receptor signaling pathway
GO:0050730 IDA regulation of peptidyl-tyrosine phosphorylation
GO:0071230 IDA cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000274071 PDGFC-002 nonsense_mediated_decay Homo_sapiens 0 1469
ENST00000422544 PDGFC-009 protein_coding Homo_sapiens 0 564
ENST00000502773 PDGFC-001 protein_coding Homo_sapiens 0 907
ENST00000506880 PDGFC-003 nonsense_mediated_decay Homo_sapiens 5e-36 156
ENST00000512711 PDGFC-005 processed_transcript Homo_sapiens 0 268
ENST00000513664 PDGFC-004 processed_transcript Homo_sapiens 9.80909e-45 183

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