C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: desmocollin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128464 Dsc2-003 ENSMUSG00000024331 10090 - 18:20031479-20059509 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000128464
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000128464 0.406±0.51 0.439±0.31 0.122±0.06 1.347±0.46 5.669±1.37 5.547±0.78 0.152±0.05 2.003±0.85 2.042±1.28 1.304±0.89 17.947±16.44 0.029±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006EN CIL_0006EN_0002 CGP 18:19960930-20059554
CIL_0006EM CIL_0006EM_0002 CGP 18:20030633-20114773

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005913 IDA cell-cell adherens junction
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0009267 IEP cellular response to starvation
GO:0016020 IEA membrane
GO:0030057 IDA desmosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251081 DSC2-002 protein_coding Homo_sapiens 0 1825
ENST00000257197 DSC1-001 protein_coding Homo_sapiens 2e-31 143
ENST00000280904 DSC2-001 protein_coding Homo_sapiens 0 1609

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