C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 16200
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120385 Gm16200-001 ENSMUSG00000081520 10090 - 9:90221295-90221625 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLiverLungOvaryPlacentaENSMUST00000120385
Transcript ID Adipose Bladder Brain Breast Kidney Liver Lung Ovary Placenta
ENSMUST00000120385 0.263±0.00 0.265±0.21 0.054±0.00 0.352±0.00 0.339±0.12 0.242±0.11 0.379±0.00 0.330±0.15 0.125±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085Y CIL_00085Y_0002 VISTA 9:90013787-90616367
CIL_0008X0 CIL_0008X0_0002 VISTA 9:90119621-90721316

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329092 RPL35A-005 processed_transcript Homo_sapiens 0 195
ENST00000429437 RPL35A-007 nonsense_mediated_decay Homo_sapiens 0 339
ENST00000439255 RPL35A-008 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000442341 RPL35A-006 protein_coding Homo_sapiens 0 348
ENST00000448864 RPL35A-002 protein_coding Homo_sapiens 0 412
ENST00000464167 RPL35A-001 protein_coding Homo_sapiens 0 412
ENST00000469688 RPL35AP32-001 processed_pseudogene Homo_sapiens 0 307
ENST00000474640 RPL35A-009 retained_intron Homo_sapiens 0 219
ENST00000485439 RPL35A-004 retained_intron Homo_sapiens 0 388
ENST00000497334 CTD-2339M3.1-001 processed_pseudogene Homo_sapiens 0 207

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