C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain containing preferred translocation partner in lipoma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115314 Lpp-203 ENSMUSG00000033306 10090 + 16:24721855-24992576 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMuscleOvaryPlacentaTestisENSMUST00000115314
Transcript ID Bladder Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000115314 38.076±11.59 0.090±0.00 0.851±0.07 0.409±0.00 5.068±1.08 2.306±0.73 2.725±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003Y6 CIL_0003Y6_0003 CGP 16:23965052-24992576
CIL_00003W CIL_00003W_0002 CGP 16:24393350-25422344

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0007155 IEA cell adhesion
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000415906 LPP-019 protein_coding Homo_sapiens 0 673
ENST00000448637 LPP-002 protein_coding Homo_sapiens 0 739
ENST00000459897 LPP-017 processed_transcript Homo_sapiens 0 353
ENST00000462758 LPP-014 processed_transcript Homo_sapiens 0 390
ENST00000471917 LPP-016 processed_transcript Homo_sapiens 0 846
ENST00000487347 LPP-015 processed_transcript Homo_sapiens 0 418
ENST00000616304 LPP-201 protein_coding Homo_sapiens 0 1775
ENST00000617246 LPP-202 protein_coding Homo_sapiens 0 1775
ENST00000618621 LPP-001 protein_coding Homo_sapiens 0 1775

Loading