C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: secernin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112050 Scrn3-003 ENSMUSG00000008226 10090 + 2:73312654-73320796 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000112050
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000112050 3.260±1.10 3.264±0.51 3.406±0.39 1.647±0.61 1.649±0.20 1.379±0.00 3.860±0.61 7.723±2.61 3.112±0.37 2.757±1.16 4.487±2.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JW CIL_0008JW_0002 VISTA 2:72839371-73441413
CIL_0008K1 CIL_0008K1_0002 VISTA 2:72842671-73444272
CIL_0008S8 CIL_0008S8_0002 VISTA 2:72879758-73480791
CIL_00096H CIL_00096H_0002 VISTA 2:72968418-73569496
CIL_0008GI CIL_0008GI_0002 VISTA 2:72975594-73577184
CIL_0008K2 CIL_0008K2_0002 VISTA 2:72979567-73580473
CIL_0001HA CIL_0001HA_0002 CGP 2:73271925-73312701
CIL_0003IH CIL_0003IH_0003 CGP 2:73283105-73337818
CIL_00063Z CIL_00063Z_0003 CGP 2:73312601-73386572

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006508 IEA proteolysis
GO:0008150 ND biological_process
GO:0016805 IEA dipeptidase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272732 SCRN3-001 protein_coding Homo_sapiens 0 612
ENST00000409673 SCRN3-006 protein_coding Homo_sapiens 0 507
ENST00000424069 SCRN3-009 protein_coding Homo_sapiens 0 407
ENST00000427038 SCRN3-004 protein_coding Homo_sapiens 0 477
ENST00000437944 SCRN3-008 nonsense_mediated_decay Homo_sapiens 0 407
ENST00000458563 SCRN3-003 protein_coding Homo_sapiens 0 612
ENST00000490927 SCRN3-007 processed_transcript Homo_sapiens 0 451
ENST00000548031 SCRN3-013 protein_coding Homo_sapiens 0 612
ENST00000548868 SCRN3-011 nonsense_mediated_decay Homo_sapiens 0 407
ENST00000610561 SCRN3-201 protein_coding Homo_sapiens 0 612

Loading