C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMAD family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109885 Smad1-002 ENSMUSG00000031681 10090 - 8:79341580-79399518 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartLungMuscleOvaryENSMUST00000109885
Transcript ID Adipose Breast Heart Lung Muscle Ovary
ENSMUST00000109885 1.232±0.00 0.834±0.24 0.368±0.00 1.188±0.07 0.310±0.02 1.489±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000165 IMP MAPK cascade
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0001710 IGI mesodermal cell fate commitment
GO:0002051 IGI osteoblast fate commitment
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006468 IDA protein phosphorylation
GO:0007179 IEA transforming growth factor beta receptor signaling pathway
GO:0007276 IMP gamete generation
GO:0008285 IMP negative regulation of cell proliferation
GO:0010628 IMP positive regulation of gene expression
GO:0030509 TAS BMP signaling pathway
GO:0030901 IMP midbrain development
GO:0030902 IMP hindbrain development
GO:0042592 IMP homeostatic process
GO:0043234 ISO protein complex
GO:0045669 IGI positive regulation of osteoblast differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051216 IGI cartilage development
GO:0060038 IGI cardiac muscle cell proliferation
GO:0060348 IGI bone development
GO:0061036 IDA positive regulation of cartilage development
GO:0071407 IDA cellular response to organic cyclic compound

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000129079 smad5-201 protein_coding Danio_rerio 0 760
ENSDART00000054175 smad5-001 protein_coding Danio_rerio 0 760
ENSDART00000028618 smad9-201 protein_coding Danio_rerio 0 316
ENSDART00000132823 smad9-001 protein_coding Danio_rerio 0 316
ENSDART00000138281 smad9-003 retained_intron Danio_rerio 0 270
ENSDART00000145509 smad9-002 processed_transcript Danio_rerio 1.4013e-45 189
ENST00000302085 SMAD1-001 protein_coding Homo_sapiens 0 1565
ENST00000394092 SMAD1-015 protein_coding Homo_sapiens 0 1555
ENST00000506626 SMAD1-017 processed_transcript Homo_sapiens 1e-28 130
ENST00000510948 SMAD1-018 processed_transcript Homo_sapiens 0 562
ENST00000511125 SMAD1-014 retained_intron Homo_sapiens 0 569
ENST00000511255 SMAD1-019 retained_intron Homo_sapiens 0 457
ENST00000512019 SMAD1-007 protein_coding Homo_sapiens 0 527
ENST00000514777 SMAD5-011 processed_transcript Homo_sapiens 0 361
ENST00000515385 SMAD1-002 protein_coding Homo_sapiens 0 1555
ENST00000515527 SMAD1-016 processed_transcript Homo_sapiens 1.4013e-45 187
ENST00000545279 SMAD5-001 protein_coding Homo_sapiens 0 673
ENST00000545620 SMAD5-201 protein_coding Homo_sapiens 0 673

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