C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histocompatibility 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109825 H13-006 ENSMUSG00000019188 10090 + 2:152669488-152686701 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLungOvaryENSMUST00000109825
Transcript ID Adrenal Breast Colon Lung Ovary
ENSMUST00000109825 116.356±29.50 41.009±0.00 47.622±10.04 15.940±0.00 91.806±39.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0002 VISTA 2:152099091-152699726
CIL_0008K5 CIL_0008K5_0002 VISTA 2:152434876-153035572
CIL_00089Z CIL_00089Z_0002 VISTA 2:152488201-153091382
CIL_0008N4 CIL_0008N4_0002 VISTA 2:152517372-153118197
CIL_0001A0 CIL_0001A0_0002 CGP 2:152626951-152708670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004190 IEA aspartic-type endopeptidase activity
GO:0005783 IDA endoplasmic reticulum
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006508 IEA proteolysis
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335574 HM13-009 protein_coding Homo_sapiens 0 747
ENST00000340852 HM13-011 protein_coding Homo_sapiens 0 747
ENST00000344042 HM13-014 protein_coding Homo_sapiens 0 697
ENST00000398174 HM13-012 protein_coding Homo_sapiens 0 747
ENST00000460225 HM13-018 processed_transcript Homo_sapiens 0 327
ENST00000466766 HM13-015 processed_transcript Homo_sapiens 0 270
ENST00000469126 HM13-019 processed_transcript Homo_sapiens 0 255
ENST00000492709 HM13-020 processed_transcript Homo_sapiens 0 235
ENST00000496438 HM13-017 processed_transcript Homo_sapiens 0 584
ENST00000498035 HM13-013 protein_coding Homo_sapiens 0 621

Loading