C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho-related BTB domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109606 Rhobtb3-002 ENSMUSG00000021589 10090 - 13:75912747-75943925 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungOvaryENSMUST00000109606
Transcript ID Adrenal Breast Colon Kidney Liver Lung Ovary
ENSMUST00000109606 3.247±1.29 1.903±0.29 1.719±0.34 0.532±0.00 0.254±0.05 0.739±0.19 10.614±2.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030F CIL_00030F_0002 CGP 13:75839868-75943925

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005737 IDA cytoplasm
GO:0007264 IEA small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000379982 RHOBTB3-001 protein_coding Homo_sapiens 0 972
ENST00000502541 RHOBTB3-016 nonsense_mediated_decay Homo_sapiens 0 394
ENST00000504949 RHOBTB3-005 retained_intron Homo_sapiens 0 935
ENST00000506817 RHOBTB3-004 protein_coding Homo_sapiens 0 368
ENST00000506959 RHOBTB3-006 protein_coding Homo_sapiens 0 715
ENST00000510226 RHOBTB3-003 processed_transcript Homo_sapiens 0 375
ENST00000510623 RHOBTB3-014 nonsense_mediated_decay Homo_sapiens 0 285
ENST00000512878 RHOBTB3-007 retained_intron Homo_sapiens 0 507
ENST00000515852 RHOBTB3-002 processed_transcript Homo_sapiens 0 228

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