C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 2610020H08 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106520 2610020H08Rik-004 ENSMUSG00000030924 10090 + 7:119794010-119848943 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderMuscleOvaryPlacentaTestisENSMUST00000106520
Transcript ID Bladder Muscle Ovary Placenta Testis
ENSMUST00000106520 1.763±0.00 0.159±0.00 1.906±1.09 1.887±0.54 9.698±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003N2 CIL_0003N2_0002 CGP 7:119768679-119848943
CIL_0003MY CIL_0003MY_0002 CGP 7:119794006-119896291

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0004527 IEA exonuclease activity
GO:0008150 ND biological_process
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261377 AC004381.6-001 protein_coding Homo_sapiens 0 987
ENST00000348433 AC004381.6-003 protein_coding Homo_sapiens 0 987
ENST00000561474 AC004381.6-020 protein_coding Homo_sapiens 1e-30 137
ENST00000563045 AC004381.6-018 retained_intron Homo_sapiens 0 294
ENST00000563068 AC004381.6-008 protein_coding Homo_sapiens 0 248
ENST00000563617 AC004381.6-013 protein_coding Homo_sapiens 0 544
ENST00000564200 AC004381.6-017 processed_transcript Homo_sapiens 0 654
ENST00000564274 AC004381.6-004 protein_coding Homo_sapiens 0 987
ENST00000565340 AC004381.6-011 protein_coding Homo_sapiens 0 488
ENST00000566276 AC004381.6-012 protein_coding Homo_sapiens 0 564
ENST00000566518 AC004381.6-015 nonsense_mediated_decay Homo_sapiens 0 654
ENST00000566993 AC004381.6-002 nonsense_mediated_decay Homo_sapiens 0 750
ENST00000567297 AC004381.6-016 processed_transcript Homo_sapiens 0 436
ENST00000568046 AC004381.6-007 protein_coding Homo_sapiens 0 233
ENST00000568334 AC004381.6-019 retained_intron Homo_sapiens 0 195
ENST00000568476 AC004381.6-014 processed_transcript Homo_sapiens 6e-38 161
ENST00000568501 AC004381.6-009 protein_coding Homo_sapiens 2e-38 163
ENST00000568647 AC004381.6-010 protein_coding Homo_sapiens 0 348
ENST00000568894 AC004381.6-006 protein_coding Homo_sapiens 0 348

Loading