C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 4A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106403 Kdm4a-005 ENSMUSG00000033326 10090 - 4:118137006-118179978 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106403
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106403 6.036±2.78 6.175±1.49 7.023±0.00 4.682±1.64 8.277±4.34 3.975±0.46 2.121±0.31 5.374±2.07 1.157±0.16 12.355±4.35 3.625±0.34 1.948±0.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002F2 CIL_0002F2_0002 CGP 4:117932154-118180043

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0014898 IMP cardiac muscle hypertrophy in response to stress
GO:0035064 ISS methylated histone binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372396 KDM4A-001 protein_coding Homo_sapiens 0 3797
ENST00000463151 KDM4A-002 processed_transcript Homo_sapiens 0 1066
ENST00000472265 KDM4A-005 processed_transcript Homo_sapiens 0 309
ENST00000485249 KDM4A-003 processed_transcript Homo_sapiens 0 885
ENST00000616726 RP11-60C6.8-001 unprocessed_pseudogene Homo_sapiens 0.00000000003 73

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