C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear transcription factor, X-box binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000091614 Nfx1-007 ENSMUSG00000028423 10090 + 4:40970906-41012608 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000091614
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000091614 5.681±0.02 5.228±0.23 9.281±4.45 3.865±0.63 1.484±0.24 2.057±0.16 5.277±2.84 3.068±0.46 1.995±0.36 11.870±4.67 15.876±4.79 3.215±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AW CIL_0006AW_0002 CGP 4:40948407-41025993
CIL_0006AR CIL_0006AR_0002 CGP 4:40970906-41048139

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0045347 IDA negative regulation of MHC class II biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318524 NFX1-004 protein_coding Homo_sapiens 0 2719
ENST00000379521 NFX1-002 protein_coding Homo_sapiens 0 2719
ENST00000379540 NFX1-001 protein_coding Homo_sapiens 0 2719
ENST00000466971 NFX1-006 processed_transcript Homo_sapiens 0 333

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