C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD18 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077088 Rad18-001 ENSMUSG00000030254 10090 - 6:112619850-112696686 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaENSMUST00000077088
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000077088 0.445±0.02 0.207±0.02 0.460±0.16 0.595±0.00 0.271±0.01 0.145±0.01 2.316±1.82 0.278±0.09 0.113±0.00 1.912±0.71 1.936±0.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003CT CIL_0003CT_0002 CGP 6:112473684-112696686
CIL_0004QQ CIL_0004QQ_0002 CGP 6:112619850-112947266

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IDA chromatin
GO:0001741 IDA XY body
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006281 IEA DNA repair
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007283 IMP spermatogenesis
GO:0008270 IEA zinc ion binding
GO:0009411 IMP response to UV
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031593 ISS polyubiquitin binding
GO:0045910 IMP negative regulation of DNA recombination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264926 RAD18-001 protein_coding Homo_sapiens 0 1016
ENST00000415439 RAD18-002 nonsense_mediated_decay Homo_sapiens 0 806

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