C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072933 Tmem40-201 ENSMUSG00000059900 10090 - 6:115729141-115758999 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072933
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072933 0.391±0.30 6.833±1.39 0.159±0.02 0.975±0.46 0.065±0.00 0.213±0.08 5.398±1.40 1.184±1.04 0.175±0.02 0.410±0.20 2.975±2.90 0.173±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SC CIL_0005SC_0002 CGP 6:115618067-115762466
CIL_0005SD CIL_0005SD_0002 CGP 6:115729131-115804893

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000127488 slc4a2b-202 protein_coding Danio_rerio 0.0001 55
ENSDART00000074161 slc4a2b-201 protein_coding Danio_rerio 0.00007 55
ENST00000264728 TMEM40-004 protein_coding Homo_sapiens 0 444
ENST00000314124 TMEM40-001 protein_coding Homo_sapiens 0 460
ENST00000435218 TMEM40-003 protein_coding Homo_sapiens 0 416
ENST00000435575 TMEM40-002 protein_coding Homo_sapiens 0 416
ENST00000476331 TMEM40-007 processed_transcript Homo_sapiens 0 394
ENST00000480698 TMEM40-005 retained_intron Homo_sapiens 0 353
ENST00000485124 TMEM40-008 retained_intron Homo_sapiens 4e-26 122

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