C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NHL repeat containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071423 Nhlrc2-201 ENSMUSG00000025078 10090 + 19:56548261-56598846 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000071423
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000071423 2.756±0.70 3.316±2.01 8.506±1.72 0.811±0.00 3.004±0.79 2.687±0.54 10.255±0.76 8.555±2.66 3.193±0.34 0.992±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001QY CIL_0001QY_0003 CGP 19:56529167-56598846
CIL_0001R7 CIL_0001R7_0003 CGP 19:56548261-56724862

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000153108 nhlrc2-001 protein_coding Danio_rerio 0 193
ENSDART00000127503 nhlrc2-201 protein_coding Danio_rerio 3.99931e-42 178
ENSDART00000113648 NHLRC2 (1 of 2)-201 protein_coding Danio_rerio 4e-37 161
ENST00000369301 NHLRC2-001 protein_coding Homo_sapiens 0 1973
ENST00000468890 NHLRC2-002 retained_intron Homo_sapiens 0 359

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