C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proline-rich coiled-coil 2B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000069817 Prrc2b-201 ENSMUSG00000039262 10090 + 2:32151148-32234536 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverMuscleOvaryPlacentaTestisENSMUST00000069817
Transcript ID Brain Breast Colon Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000069817 31.564±15.16 3.021±0.00 4.114±0.00 1.616±0.00 1.206±0.22 17.718±3.47 11.238±5.79 7.308±2.62 0.716±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088E CIL_00088E_0002 VISTA 2:31827730-32428586
CIL_0002ED CIL_0002ED_0003 CGP 2:32095528-32234537
CIL_0006ID CIL_0006ID_0002 CGP 2:32151082-32255005

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320547 PRRC2B-005 protein_coding Homo_sapiens 0 592
ENST00000357304 PRRC2B-201 protein_coding Homo_sapiens 0 6741
ENST00000405995 PRRC2B-001 protein_coding Homo_sapiens 0 2739
ENST00000417340 RP4-682E18.1-001 processed_pseudogene Homo_sapiens 1e-16 92
ENST00000451855 PRRC2B-004 protein_coding Homo_sapiens 0 1753
ENST00000456307 PRRC2B-002 protein_coding Homo_sapiens 0 604
ENST00000458550 PRRC2B-202 protein_coding Homo_sapiens 0 961
ENST00000465931 PRRC2B-006 processed_transcript Homo_sapiens 0 320
ENST00000489593 PRRC2B-007 processed_transcript Homo_sapiens 0 394

Loading