C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000064376 Arhgap4-001 ENSMUSG00000031389 10090 - X:73894352-73911330 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLungENSMUST00000064376
Transcript ID Breast Lung
ENSMUST00000064376 16.978±3.87 4.342±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001US CIL_0001US_0002 CGP X:73793359-73896105
CIL_00068C CIL_00068C_0002 CGP X:73891442-73921870

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005100 IEA Rho GTPase activator activity
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005874 IEA microtubule
GO:0007165 IEA signal transduction
GO:0007399 IEA nervous system development
GO:0010764 IEA negative regulation of fibroblast migration
GO:0030426 IEA growth cone
GO:0030517 IEA negative regulation of axon extension
GO:0032321 IEA positive regulation of Rho GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000084834 srgap3-001 protein_coding Danio_rerio 0.000000000001 81
ENST00000350060 ARHGAP4-003 protein_coding Homo_sapiens 0 1663
ENST00000370016 ARHGAP4-011 protein_coding Homo_sapiens 0 1663
ENST00000370028 ARHGAP4-001 protein_coding Homo_sapiens 0 1598
ENST00000393721 ARHGAP4-024 protein_coding Homo_sapiens 0 1264
ENST00000404127 ARHGAP4-014 nonsense_mediated_decay Homo_sapiens 0 1663
ENST00000420383 ARHGAP4-002 nonsense_mediated_decay Homo_sapiens 0 904
ENST00000442172 ARHGAP4-010 protein_coding Homo_sapiens 0 475
ENST00000454164 ARHGAP4-009 protein_coding Homo_sapiens 1e-30 137
ENST00000461739 ARHGAP4-007 retained_intron Homo_sapiens 2e-22 110
ENST00000466928 ARHGAP4-006 retained_intron Homo_sapiens 0 226
ENST00000467421 ARHGAP4-008 processed_transcript Homo_sapiens 0 477
ENST00000470209 ARHGAP4-012 retained_intron Homo_sapiens 0 1026
ENST00000494302 ARHGAP4-013 retained_intron Homo_sapiens 0 1026
ENST00000494397 ARHGAP4-016 retained_intron Homo_sapiens 0 532

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