C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 66
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050480 Ccdc66-201 ENSMUSG00000046753 10090 - 14:27482412-27508460 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000050480
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000050480 1.438±0.41 5.958±1.11 7.346±2.41 1.262±0.34 1.178±0.06 1.338±0.12 1.284±0.10 2.290±1.55 2.177±0.47 4.779±4.55 6.405±4.10 4.829±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UE CIL_0007UE_0002 VISTA 14:27067008-27667960
CIL_00002Z CIL_00002Z_0002 CGP 14:27238039-27483552
CIL_00002W CIL_00002W_0002 CGP 14:27428847-27508460

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0046548 IMP retinal rod cell development
GO:0060060 IMP post-embryonic retina morphogenesis in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000326595 CCDC66-002 protein_coding Homo_sapiens 0 1838
ENST00000341455 CCDC66-005 nonsense_mediated_decay Homo_sapiens 0 1454
ENST00000394672 CCDC66-001 protein_coding Homo_sapiens 0 1858
ENST00000422222 CCDC66-008 protein_coding Homo_sapiens 0 627
ENST00000422788 CCDC66-010 nonsense_mediated_decay Homo_sapiens 2e-38 163
ENST00000434467 CCDC66-003 nonsense_mediated_decay Homo_sapiens 7e-38 163
ENST00000439445 CCDC66-009 nonsense_mediated_decay Homo_sapiens 2e-38 163
ENST00000442522 CCDC66-004 processed_transcript Homo_sapiens 0 553
ENST00000459746 CCDC66-011 processed_transcript Homo_sapiens 2e-38 163
ENST00000460838 CCDC66-021 processed_transcript Homo_sapiens 0 265
ENST00000468108 CCDC66-017 retained_intron Homo_sapiens 0 403
ENST00000469966 CCDC66-020 processed_transcript Homo_sapiens 0 200
ENST00000471681 CCDC66-015 nonsense_mediated_decay Homo_sapiens 0 1151
ENST00000472582 CCDC66-022 processed_transcript Homo_sapiens 0 392
ENST00000484623 CCDC66-013 processed_transcript Homo_sapiens 0 568
ENST00000487739 CCDC66-019 retained_intron Homo_sapiens 6e-27 124

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